If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ), 'gf_id' => 'HOM05D000871', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000871' ), 'data_identifier' => 'HOM05D000871', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000871', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p01290' => 'bna', 'A02p40760' => 'bna', 'A02p40770' => 'bna', 'A02p40790' => 'bna', 'A04p07850' => 'bna', 'A04p17420' => 'bna', 'A06p34980' => 'bna', 'A06p34990' => 'bna', 'A09p06590' => 'bna', 'A09p18260' => 'bna', 'Aa31LG11G3410' => 'aar', 'Aa31LG11G3420' => 'aar', 'Aa31LG2G10660' => 'aar', 'Aa31LG6G14640' => 'aar', 'Aa31LG7G13980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4157' => 'aag', 'Actinidia04424' => 'ach', 'Actinidia04425' => 'ach', 'Actinidia10230' => 'ach', 'Actinidia10232' => 'ach', 'Actinidia19287' => 'ach', 'Actinidia28009' => 'ach', 'Actinidia36418' => 'ach', 'Ah.03g140740' => 'amhyb', 'Ah.11g039180' => 'amhyb', 'AL2G17770' => 'aly', 'AL4G12410' => 'aly', 'AL6G35500' => 'aly', 'AL6G35510' => 'aly', 'AL6G35530' => 'aly', 'AL6G35540' => 'aly', 'AL6G35550' => 'aly', 'AL7G12920' => 'aly', 'Aqoxy2G02486' => 'aox', 'Aqoxy5G00820' => 'aox', 'Aqoxy6G02965' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3S2NJ4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3ZSM3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7UK7IQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D0CGVG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F74L81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HP76IN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J84JDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8Q3D1' => 'arhy', 'AT1G58440' => 'ath', 'AT2G22830' => 'ath', 'AT4G37760' => 'ath', 'AT5G24140' => 'ath', 'AT5G24150' => 'ath', 'AT5G24155' => 'ath', 'AT5G24160' => 'ath', 'ATR0383G001' => 'atr', 'ATR0739G162' => 'atr', 'Atru.chr13.878' => 'acertr', 'Atru.chr2.2133' => 'acertr', 'Atru.chr2.2134' => 'acertr', 'Atru.chr2.2138_Atru.chr2.2139_Atru.chr2.2141' => 'acertr', 'Atru.chr2.2140' => 'acertr', 'Atru.chr2.2144' => 'acertr', 'Atru.chr3.1067' => 'acertr', 'Atru.chr5.2158' => 'acertr', 'AUR62004036' => 'cqu', 'AUR62007545' => 'cqu', 'AUR62034985' => 'cqu', 'AUR62039349' => 'cqu', 'BcaB02g08622' => 'bca', 'BcaB04g19835' => 'bca', 'BcaB06g27845' => 'bca', 'BcaB07g29895' => 'bca', 'BcaB07g29896' => 'bca', 'BcaB07g29897' => 'bca', 'BcaB08g34908' => 'bca', 'BcaC02g08591' => 'bca', 'BcaC02g09338' => 'bca', 'BcaC03g18003' => 'bca', 'BcaC03g18005' => 'bca', 'BcaC03g18007' => 'bca', 'BcaC04g22157' => 'bca', 'BcaC04g23527' => 'bca', 'BcaC07g41216' => 'bca', 'BcaNung01213' => 'bca', 'BcaNung01809' => 'bca', 'BcaNung01813' => 'bca', 'BolC1t00142H' => 'bol', 'BolC2t12111H' => 'bol', 'BolC2t12115H' => 'bol', 'BolC2t12117H' => 'bol', 'BolC4t25731H' => 'bol', 'BolC4t26794H' => 'bol', 'BolC7t44883H' => 'bol', 'BolC7t44884H' => 'bol', 'BolC8t51782H' => 'bol', 'BolC9t53649H' => 'bol', 'BolC9t55191H' => 'bol', 'BolC9t55193H' => 'bol', 'BraA01t00126Z' => 'bra', 'BraA02t09023Z' => 'bra', 'BraA02t09024Z' => 'bra', 'BraA04t16473Z' => 'bra', 'BraA04t17365Z' => 'bra', 'BraA06t26422Z' => 'bra', 'BraA09t36305Z' => 'bra', 'BraA09t37457Z' => 'bra', 'C01p01450' => 'bna', 'C02p60620' => 'bna', 'C02p60640' => 'bna', 'C02p60680' => 'bna', 'C04p41480' => 'bna', 'C04p52170' => 'bna', 'C07p43560' => 'bna', 'C07p43570' => 'bna', 'C08p42230' => 'bna', 'C09p07360' => 'bna', 'C09p22740' => 'bna', 'C09p22760' => 'bna', 'CAN.G252.12' => 'can', 'CAN.G416.5' => 'can', 'CAN.G504.31' => 'can', 'CAN.G975.7' => 'can', 'CAN.G975.8' => 'can', 'CANSAT25G0142' => 'cansat', 'CANSAT25G0545' => 'cansat', 'CARHR114130' => 'chi', 'CARHR114140' => 'chi', 'CARHR189360' => 'chi', 'CARHR189370' => 'chi', 'CARHR189380' => 'chi', 'CARHR189390' => 'chi', 'CARHR189400' => 'chi', 'CARHR189410' => 'chi', 'CARHR189420' => 'chi', 'CARHR189430' => 'chi', 'CARHR189440' => 'chi', 'CARHR246150' => 'chi', 'CARHR283960' => 'chi', 'Carub.0002s0607' => 'cru', 'Carub.0004s0196' => 'cru', 'Carub.0006s2187' => 'cru', 'Carub.0006s2188' => 'cru', 'Carub.0006s2189' => 'cru', 'Carub.0006s2190' => 'cru', 'Carub.0007s0249' => 'cru', 'Ca_00197_v3' => 'car', 'Ca_06988_v3' => 'car', 'Ca_15884_v3' => 'car', 'Ca_18425_v3' => 'car', 'CBR_g34714' => 'cbr', 'CBR_g61482' => 'cbr', 'Cc01_g00530' => 'ccan', 'Cc02_g20360' => 'ccan', 'Cc07_g07420' => 'ccan', 'Cc10_g04050' => 'ccan', 'Cc10_g07750' => 'ccan', 'CDE01G0503' => 'cde', 'CDE07G1285' => 'cde', 'Cfa006776' => 'cfa', 'Cfa006777' => 'cfa', 'Cfa013726' => 'cfa', 'Cfa021660' => 'cfa', 'Ciclev10000839m.g' => 'ccl', 'Ciclev10010276m.g' => 'ccl', 'Ciclev10010419m.g' => 'ccl', 'Ciclev10010705m.g' => 'ccl', 'Ciclev10010782m.g' => 'ccl', 'Ciclev10025367m.g' => 'ccl', 'Ciclev10029886m.g' => 'ccl', 'Ciclev10029969m.g' => 'ccl', 'CiPaw.05G024700' => 'cil', 'CiPaw.07G036700' => 'cil', 'CiPaw.07G171100' => 'cil', 'CiPaw.08G053100' => 'cil', 'CiPaw.08G149500' => 'cil', 'CiPaw.08G149600' => 'cil', 'CiPaw.08G149700' => 'cil', 'CiPaw.08G149800' => 'cil', 'ClCG02G007380' => 'cla', 'ClCG05G017620' => 'cla', 'ClCG08G016750' => 'cla', 'ClCG10G009700' => 'cla', 'COL.COLO4_11622' => 'col', 'COL.COLO4_11901' => 'col', 'COL.COLO4_12076' => 'col', 'COL.COLO4_17827' => 'col', 'COL.COLO4_17828' => 'col', 'COL.COLO4_17829' => 'col', 'COL.COLO4_17830' => 'col', 'COL.COLO4_17831' => 'col', 'COL.COLO4_28449' => 'col', 'COL.COLO4_35686' => 'col', 'COL.COLO4_35687' => 'col', 'COL.COLO4_35689' => 'col', 'COL.COLO4_35703' => 'col', 'COL.COLO4_35704' => 'col', 'COL.COLO4_37499' => 'col', 'Cpa.g.sc129.68' => 'cpa', 'Cpa.g.sc160.28' => 'cpa', 'Cre17.g734644' => 'cre', 'CsaV3_2G025870' => 'csa', 'CsaV3_4G035350' => 'csa', 'CsaV3_5G017540' => 'csa', 'CsaV3_7G007520' => 'csa', 'CSS0005808' => 'camsi', 'CSS0025875' => 'camsi', 'CSS0037114' => 'camsi', 'CSS0038397' => 'camsi', 'CSS0038571' => 'camsi', 'CSS0041648' => 'camsi', 'CSS0043853' => 'camsi', 'DCAR_001860' => 'dca', 'DCAR_010798' => 'dca', 'DCAR_012827' => 'dca', 'DCAR_026887' => 'dca', 'DCAR_029850' => 'dca', 'Dinv09501' => 'din', 'Dinv09502' => 'din', 'Dinv09503' => 'din', 'Dinv09504' => 'din', 'Dinv16050' => 'din', 'Dinv16051' => 'din', 'Dinv23051' => 'din', 'Dinv25480' => 'din', 'Dinv26964' => 'din', 'Dinv39199' => 'din', 'Dinv44925' => 'din', 'Duzib041G0102' => 'dzi', 'Duzib052G0528' => 'dzi', 'Duzib052G1239' => 'dzi', 'Duzib093G1756' => 'dzi', 'Duzib116G0530' => 'dzi', 'Duzib132G0101' => 'dzi', 'Duzib147G0138' => 'dzi', 'Duzib248G0183' => 'dzi', 'Duzib248G1223' => 'dzi', 'ECA232G0769' => 'eca', 'ECA234G2922' => 'eca', 'ECA236G2010' => 'eca', 'ECA238G4260' => 'eca', 'EL10Ac1g02341' => 'bvu', 'EL10Ac6g15589' => 'bvu', 'Eucgr.F00103' => 'egr', 'Eucgr.F02214' => 'egr', 'Eucgr.F02215' => 'egr', 'Eucgr.I00669' => 'egr', 'Eucgr.I02513' => 'egr', 'Eucgr.J03128' => 'egr', 'Eucgr.L03695' => 'egr', 'FAN12G1477' => 'fan', 'FAN15G0242' => 'fan', 'FAN15G0840' => 'fan', 'FAN15G0856' => 'fan', 'FAN15G1007' => 'fan', 'FAN15G1577' => 'fan', 'FAN15G1654' => 'fan', 'FAN19G2941' => 'fan', 'FAN19G3225' => 'fan', 'FAN20G0691' => 'fan', 'FAN20G0840' => 'fan', 'FAN20G0936' => 'fan', 'FAN20G1137' => 'fan', 'FAN20G1655' => 'fan', 'FAN20G1727' => 'fan', 'FAN20G1737' => 'fan', 'FAN20G1768' => 'fan', 'FAN20G2793' => 'fan', 'FAN22G0747' => 'fan', 'FAN23G0942' => 'fan', 'FAN23G1224' => 'fan', 'FAN23G2337' => 'fan', 'FAN24G2306' => 'fan', 'FAN24G2324' => 'fan', 'FAN24G2412' => 'fan', 'FAN24G3562' => 'fan', 'FAN24G3566' => 'fan', 'FAN26G0133' => 'fan', 'FAN26G0965' => 'fan', 'FAN26G3119' => 'fan', 'FAN27G0781' => 'fan', 'FAN27G0863' => 'fan', 'FAN27G1958' => 'fan', 'FAN27G2167' => 'fan', 'FAN27G2348' => 'fan', 'FAN27G2424' => 'fan', 'FAN27G2743' => 'fan', 'FAN28G0055' => 'fan', 'FAN28G0411' => 'fan', 'FAN28G1103' => 'fan', 'FvH4_1g18300' => 'fve', 'FvH4_1g20540' => 'fve', 'FvH4_1g27957' => 'fve', 'FvH4_1g28030' => 'fve', 'FvH4_2g02580' => 'fve', 'FvH4_2g02590' => 'fve', 'FvH4_2g02600' => 'fve', 'FvH4_2g02650' => 'fve', 'FvH4_2g02652' => 'fve', 'FvH4_2g02660' => 'fve', 'FvH4_2g04270' => 'fve', 'FvH4_2g32500' => 'fve', 'FvH4_4g14030' => 'fve', 'FvH4_4g14040' => 'fve', 'FvH4_4g14050' => 'fve', 'Glyma.04G048200' => 'gma', 'Glyma.04G048300' => 'gma', 'Glyma.04G048500' => 'gma', 'Glyma.06G049500' => 'gma', 'Glyma.07G185500' => 'gma', 'Glyma.08G063700' => 'gma', 'Glyma.13G253100' => 'gma', 'Glyma.14G090400' => 'gma', 'Glyma.15G061800' => 'gma', 'Glyma.17G232255' => 'gma', 'Glyma.18G118100' => 'gma', 'Gohir.A01G124100' => 'ghi', 'Gohir.A02G149400' => 'ghi', 'Gohir.A03G212900' => 'ghi', 'Gohir.A04G127918' => 'ghi', 'Gohir.A04G128100' => 'ghi', 'Gohir.A04G128106' => 'ghi', 'Gohir.A04G128112' => 'ghi', 'Gohir.A04G128118' => 'ghi', 'Gohir.A04G128124' => 'ghi', 'Gohir.A04G128400' => 'ghi', 'Gohir.A04G128500' => 'ghi', 'Gohir.A05G212500' => 'ghi', 'Gohir.A06G026700' => 'ghi', 'Gohir.A11G211700' => 'ghi', 'Gohir.D01G111900' => 'ghi', 'Gohir.D02G234400' => 'ghi', 'Gohir.D03G030900' => 'ghi', 'Gohir.D04G172650' => 'ghi', 'Gohir.D04G172700' => 'ghi', 'Gohir.D04G172750' => 'ghi', 'Gohir.D04G172800' => 'ghi', 'Gohir.D04G172833' => 'ghi', 'Gohir.D04G172866' => 'ghi', 'Gohir.D04G172900' => 'ghi', 'Gohir.D05G215700' => 'ghi', 'Gohir.D06G024000' => 'ghi', 'Gohir.D11G211201' => 'ghi', 'Gorai.002G136800' => 'gra', 'Gorai.003G032500' => 'gra', 'Gorai.005G262400' => 'gra', 'Gorai.007G226900' => 'gra', 'Gorai.009G222400' => 'gra', 'Gorai.010G028500' => 'gra', 'Gorai.012G162100' => 'gra', 'Gorai.012G162200' => 'gra', 'Gorai.012G162300' => 'gra', 'Gorai.012G162400' => 'gra', 'Gorai.012G162500' => 'gra', 'Gorai.012G162600' => 'gra', 'Gorai.012G162700' => 'gra', 'Gorai.012G162800' => 'gra', 'Gorai.012G162900' => 'gra', 'Gorai.012G163000' => 'gra', 'Gorai.N018500' => 'gra', 'Gorai.N018600' => 'gra', 'GSVIVG01006926001' => 'vvi', 'GSVIVG01007278001' => 'vvi', 'GSVIVG01009287001' => 'vvi', 'GSVIVG01036971001' => 'vvi', 'GSVIVG01036973001' => 'vvi', 'HanXRQChr04g0112431' => 'han', 'HanXRQChr05g0137601' => 'han', 'HanXRQChr06g0185161' => 'han', 'HanXRQChr10g0297701' => 'han', 'HanXRQChr10g0319891' => 'han', 'HanXRQChr14g0447731' => 'han', 'HanXRQChr15g0493131' => 'han', 'Haze_03981' => 'cav', 'Haze_22373' => 'cav', 'Hma1.2p1_0001F.1_g001680' => 'hma', 'Hma1.2p1_0156F.1_g068720' => 'hma', 'Hma1.2p1_1230F.1_g268760' => 'hma', 'HPP92_019571' => 'vpl', 'Hund05267' => 'sun', 'Hund13967' => 'sun', 'Hund14195' => 'sun', 'Hund16420' => 'sun', 'Hund23758' => 'sun', 'Lalb_Chr14g0367991' => 'lal', 'Lalb_Chr15g0090211' => 'lal', 'Lalb_Chr16g0383181' => 'lal', 'Lalb_Chr24g0399531' => 'lal', 'Lj1g0019713' => 'lja', 'Lj2C423G4' => 'lonja', 'Lj4C751G2' => 'lonja', 'Lj4C76T5' => 'lonja', 'Lj4g0009126' => 'lja', 'Lj4g0016542' => 'lja', 'Lj4g0027627' => 'lja', 'Lj5C223G18' => 'lonja', 'Lj5C223G24' => 'lonja', 'Lj5g0009397' => 'lja', 'Lj6g0000740' => 'lja', 'Lj6g0015048' => 'lja', 'Lj9A340G46' => 'lonja', 'Lj9A340T56' => 'lonja', 'Lj9A340T59' => 'lonja', 'Lsat_1_v5_gn_2_80100' => 'lsa', 'Lsat_1_v5_gn_5_110501' => 'lsa', 'Lsat_1_v5_gn_6_108381' => 'lsa', 'Lsat_1_v5_gn_7_84200' => 'lsa', 'Manes.05G184200' => 'mes', 'Manes.07G049600' => 'mes', 'Manes.10G087710' => 'mes', 'Manes.10G087720' => 'mes', 'Manes.10G087730' => 'mes', 'Manes.10G088600' => 'mes', 'Manes.10G088658' => 'mes', 'Manes.10G088700' => 'mes', 'Manes.10G088716' => 'mes', 'Manes.10G088900' => 'mes', 'Manes.10G089100' => 'mes', 'Manes.10G089158' => 'mes', 'Manes.10G090050' => 'mes', 'Manes.10G090101' => 'mes', 'Manes.10G090151' => 'mes', 'Manes.10G091832' => 'mes', 'Manes.12G118000' => 'mes', 'Manes.13G108200' => 'mes', 'Manes.18G050300' => 'mes', 'Mapoly0001s0179' => 'mpo', 'MBI16_g09818_MAGBIO' => 'mbi', 'MBI16_g35727_MAGBIO' => 'mbi', 'MCO14G030' => 'mco', 'MD00G1080800' => 'mdo', 'MD02G1190300' => 'mdo', 'MD02G1272900' => 'mdo', 'MD05G1111600' => 'mdo', 'MD05G1111700' => 'mdo', 'MD05G1111800' => 'mdo', 'MD05G1111900' => 'mdo', 'MD05G1112000' => 'mdo', 'MD05G1112100' => 'mdo', 'MD05G1112200' => 'mdo', 'MD05G1293500' => 'mdo', 'MD07G1041500' => 'mdo', 'MD07G1041600' => 'mdo', 'MD07G1041700' => 'mdo', 'MD07G1041800' => 'mdo', 'MD07G1041900' => 'mdo', 'MD07G1042000' => 'mdo', 'MD08G1076800' => 'mdo', 'MD10G1114800' => 'mdo', 'MD15G1064100' => 'mdo', 'MD15G1301500' => 'mdo', 'Medtr1g017270' => 'mtr', 'Medtr2g022940' => 'mtr', 'Medtr3g103510' => 'mtr', 'Medtr4g092640' => 'mtr', 'Medtr5g030880' => 'mtr', 'Medtr6g034955' => 'mtr', 'Medtr6g035065' => 'mtr', 'MELO3C010781.2' => 'cme', 'MELO3C016845.2' => 'cme', 'MELO3C018550.2' => 'cme', 'Migut.B00080' => 'egut', 'Migut.C00442' => 'egut', 'Migut.N01115' => 'egut', 'MSTRG.15341' => 'ama', 'MSTRG.16905' => 'ama', 'MSTRG.25015' => 'ama', 'MSTRG.27778' => 'ama', 'MSTRG.5303' => 'ama', 'MSTRG.5305' => 'ama', 'Nitab4.5_0000036g0190' => 'nta', 'Nitab4.5_0001074g0020' => 'nta', 'Nitab4.5_0001477g0160' => 'nta', 'Nitab4.5_0001494g0100' => 'nta', 'Nitab4.5_0002254g0020' => 'nta', 'Nitab4.5_0003390g0020' => 'nta', 'Nn5g30691' => 'nnu', 'Nn6g34541' => 'nnu', 'Oeu006688.1' => 'oeu', 'Oeu010481.1' => 'oeu', 'Oeu014215.1' => 'oeu', 'Oeu014316.1' => 'oeu', 'Oeu014317.1' => 'oeu', 'Oeu026681.1' => 'oeu', 'Oeu037374.1' => 'oeu', 'Oeu048562.1' => 'oeu', 'Oeu053658.1' => 'oeu', 'Oeu059874.1' => 'oeu', 'Os03g0231700' => 'osa', 'Os03g0231800' => 'osa', 'Peaxi162Scf00152g00612' => 'pax', 'Peaxi162Scf00449g00512' => 'pax', 'Peaxi162Scf01161g00325' => 'pax', 'PGR004G1108' => 'pgr', 'PGR031G0522' => 'pgr', 'PGR037G0005' => 'pgr', 'PGR083G1760' => 'pgr', 'PGR142G1642' => 'pgr', 'PGSC0003DMG400003324' => 'stu', 'PGSC0003DMG400004923' => 'stu', 'PGSC0003DMG400005105' => 'stu', 'Phvul.001G031600' => 'pvu', 'Phvul.002G216900' => 'pvu', 'Phvul.006G029400' => 'pvu', 'Phvul.006G197900' => 'pvu', 'Phvul.L001634' => 'pvu', 'Potri.002G114500' => 'ptr', 'Potri.005G146700' => 'ptr', 'Potri.007G007600' => 'ptr', 'Potri.012G120676' => 'ptr', 'Potri.012G121136' => 'ptr', 'Potri.015G120900' => 'ptr', 'Potri.015G121201' => 'ptr', 'Potri.019G014376' => 'ptr', 'Potri.019G014378' => 'ptr', 'Pp3c14_9260' => 'ppa', 'Pp3c14_9270' => 'ppa', 'Pp3c19_4640' => 'ppa', 'Prupe.1G418100' => 'ppe', 'Prupe.6G216100' => 'ppe', 'Prupe.8G156600' => 'ppe', 'Prupe.8G156700' => 'ppe', 'Prupe.8G156800' => 'ppe', 'Psat1g163200' => 'psa', 'Psat1g212120' => 'psa', 'Psat3g155040' => 'psa', 'Psat3g158400' => 'psa', 'Psat4g097400' => 'psa', 'Psat4g097440' => 'psa', 'Psat5g042360' => 'psa', 'Psat5g136320' => 'psa', 'Psat5g136400' => 'psa', 'Psat6g018480' => 'psa', 'Psat6g093680' => 'psa', 'Psat6g149720' => 'psa', 'Psat7g104480' => 'psa', 'PSO017G3435' => 'pso', 'PSO170G5521' => 'pso', 'PSO541G1952' => 'pso', 'PSO675G8448' => 'pso', 'QL05p005291' => 'qlo', 'QL06p038677' => 'qlo', 'QL06p038685' => 'qlo', 'QL06p038717' => 'qlo', 'QL09p016092' => 'qlo', 'QL11p027722' => 'qlo', 'RcHm_v2.0_Chr1g0337281' => 'rch', 'RcHm_v2.0_Chr1g0337291' => 'rch', 'RcHm_v2.0_Chr1g0337301' => 'rch', 'RcHm_v2.0_Chr2g0108881' => 'rch', 'RcHm_v2.0_Chr2g0108891' => 'rch', 'RcHm_v2.0_Chr2g0108901' => 'rch', 'RcHm_v2.0_Chr2g0108921' => 'rch', 'RcHm_v2.0_Chr2g0108951' => 'rch', 'RcHm_v2.0_Chr2g0113301' => 'rch', 'RcHm_v2.0_Chr2g0122841' => 'rch', 'RcHm_v2.0_Chr4g0411471' => 'rch', 'RcHm_v2.0_Chr4g0411481' => 'rch', 'RcHm_v2.0_Chr4g0411491' => 'rch', 'RcHm_v2.0_Chr4g0416291' => 'rch', 'RcHm_v2.0_Chr4g0419301' => 'rch', 'RcHm_v2.0_Chr4g0419311' => 'rch', 'RcHm_v2.0_Chr4g0419361' => 'rch', 'RcHm_v2.0_Chr4g0419381' => 'rch', 'RcHm_v2.0_Chr4g0419391' => 'rch', 'RcHm_v2.0_Chr4g0419471' => 'rch', 'RcHm_v2.0_Chr4g0419611' => 'rch', 'RcHm_v2.0_Chr5g0049841' => 'rch', 'RcHm_v2.0_Chr5g0066171' => 'rch', 'RcHm_v2.0_Chr5g0083681' => 'rch', 'RcHm_v2.0_Chr6g0246411' => 'rch', 'RcHm_v2.0_Chr6g0246421' => 'rch', 'RcHm_v2.0_Chr6g0246521' => 'rch', 'RcHm_v2.0_Chr6g0246791' => 'rch', 'RcHm_v2.0_Chr6g0246801' => 'rch', 'RcHm_v2.0_Chr6g0246811' => 'rch', 'RcHm_v2.0_Chr6g0246841' => 'rch', 'RcHm_v2.0_Chr6g0246851' => 'rch', 'RcHm_v2.0_Chr6g0246941' => 'rch', 'RcHm_v2.0_Chr6g0246951' => 'rch', 'RcHm_v2.0_Chr6g0246961' => 'rch', 'RcHm_v2.0_Chr6g0246981' => 'rch', 'RcHm_v2.0_Chr6g0246991' => 'rch', 'RcHm_v2.0_Chr6g0247001' => 'rch', 'RcHm_v2.0_Chr6g0310151' => 'rch', 'RcHm_v2.0_Chr7g0177171' => 'rch', 'RcHm_v2.0_Chr7g0177181' => 'rch', 'RcHm_v2.0_Chr7g0177191' => 'rch', 'RcHm_v2.0_Chr7g0208141' => 'rch', 'RcHm_v2.0_Chr7g0232071' => 'rch', 'Rhsim05G0094200' => 'rsi', 'Rhsim06G0065400' => 'rsi', 'Rhsim06G0065500' => 'rsi', 'Rhsim08G0090000' => 'rsi', 'Sabra05G0117100' => 'sbr', 'Sabra15G0036400' => 'sbr', 'Sabra15G0137300' => 'sbr', 'Sabra15G0137400' => 'sbr', 'Sabra19G0015400' => 'sbr', 'Sabra19G0015600' => 'sbr', 'Sabra19G0027000' => 'sbr', 'Sabra19G0028600' => 'sbr', 'SalBow3G1679' => 'sbo', 'SalBow6G6822' => 'sbo', 'SalBow7G4368' => 'sbo', 'Sc03g0002700' => 'sci', 'Sc03g0002730' => 'sci', 'Sc03g0002750' => 'sci', 'Sc03g0002760' => 'sci', 'Sc03g0002850' => 'sci', 'Sc14g0002770' => 'sci', 'Sc15g0005320' => 'sci', 'Sed0001094' => 'sed', 'Sed0003863' => 'sed', 'Sed0014007' => 'sed', 'SGA_v2.0_scaffold219G42548' => 'sas', 'SGA_v2.0_scaffold238G43885' => 'sas', 'SGA_v2.0_scaffold337G49173' => 'sas', 'SHI08449' => 'shi', 'SHI08452' => 'shi', 'SMO141G0249' => 'smo', 'Solyc02g063523.1' => 'sly', 'Solyc02g063527.1' => 'sly', 'Solyc02g063547.1' => 'sly', 'Solyc04g077440.4' => 'sly', 'Sopen02g014620' => 'spe', 'Sopen02g014650' => 'spe', 'Sopen04g031030' => 'spe', 'Sp2g05160' => 'spa', 'Sp2g23160' => 'spa', 'Sp2g23170' => 'spa', 'Sp4g01850' => 'spa', 'Sp7g35410' => 'spa', 'SpUn0042_0010' => 'spa', 'TAR376G1003' => 'tar', 'TAR381G1038' => 'tar', 'TAR625G1074' => 'tar', 'TAR628G1258' => 'tar', 'THA.LOC104798890' => 'tha', 'THA.LOC104798908' => 'tha', 'THA.LOC104798909' => 'tha', 'THA.LOC104801658' => 'tha', 'THA.LOC104807642' => 'tha', 'THA.LOC104822879' => 'tha', 'THA.LOC104823679' => 'tha', 'THA.LOC104823760' => 'tha', 'Thecc.01G077200' => 'tca', 'Thecc.01G128400' => 'tca', 'Thecc.01G129100' => 'tca', 'Thecc.01G129700' => 'tca', 'Thecc.02G034100' => 'tca', 'Thecc.02G034200' => 'tca', 'Thecc.02G034300' => 'tca', 'Thecc.02G034400' => 'tca', 'Thecc.08G083200' => 'tca', 'Thhalv10000099m.g' => 'esa', 'Thhalv10004005m.g' => 'esa', 'Thhalv10005661m.g' => 'esa', 'Thhalv10023406m.g' => 'esa', 'TPR.G13046' => 'tpr', 'TPR.G16900' => 'tpr', 'TPR.G28331' => 'tpr', 'TPR.G30215' => 'tpr', 'TPR.G36564' => 'tpr', 'TWI12G1432' => 'twi', 'TWI14G1353' => 'twi', 'TWI14G1356' => 'twi', 'TWI56G0882' => 'twi', 'TWI59G0897' => 'twi', 'TWI74G0978' => 'twi', 'unitig_62.g23634' => 'ugi', 'unitig_747.g21250' => 'ugi', 'vmacro04603' => 'vma', 'vmacro18008' => 'vma', 'vmacro21406' => 'vma', 'vmacro21407' => 'vma', 'vmacro22266' => 'vma', 'VMungo0251G0009' => 'vmu', 'VMungo0464G2141' => 'vmu', 'VMungo0540G0205' => 'vmu', 'VMungo0540G1810' => 'vmu', 'VMungo0540G2066' => 'vmu', 'VMungo0647G0076' => 'vmu', 'VMungo1309G3053' => 'vmu', 'Zm00001eb009510' => 'zma', 'Zm00001eb399370' => 'zma' ) $gf_id = 'HOM05D000871' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000871' ) $data_identifier = 'HOM05D000871' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 7, 'amhyb' => (int) 2, 'aly' => (int) 8, 'aox' => (int) 3, 'arhy' => (int) 8, 'ath' => (int) 7, 'atr' => (int) 2, 'acertr' => (int) 8, 'cqu' => (int) 4, 'bca' => (int) 18, 'bol' => (int) 12, 'bra' => (int) 8, 'can' => (int) 5, 'cansat' => (int) 2, 'chi' => (int) 13, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 2, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 4, 'ccl' => (int) 8, 'cil' => (int) 8, 'cla' => (int) 4, 'col' => (int) 15, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 7, 'dca' => (int) 5, 'din' => (int) 11, 'dzi' => (int) 9, 'eca' => (int) 4, 'bvu' => (int) 2, 'egr' => (int) 7, 'fan' => (int) 40, 'fve' => (int) 15, 'gma' => (int) 11, 'ghi' => (int) 27, 'gra' => (int) 18, 'vvi' => (int) 5, 'han' => (int) 7, 'cav' => (int) 2, 'hma' => (int) 3, 'vpl' => (int) 1, 'sun' => (int) 5, 'lal' => (int) 4, 'lja' => (int) 7, 'lonja' => (int) 8, 'lsa' => (int) 4, 'mes' => (int) 19, 'mpo' => (int) 1, 'mbi' => (int) 2, 'mco' => (int) 1, 'mdo' => (int) 21, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 3, 'ama' => (int) 6, 'nta' => (int) 6, 'nnu' => (int) 2, 'oeu' => (int) 10, 'osa' => (int) 2, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 3, 'pvu' => (int) 5, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 13, 'pso' => (int) 4, 'qlo' => (int) 6, 'rch' => (int) 44, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 3, 'sci' => (int) 7, 'sed' => (int) 3, 'sas' => (int) 3, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 4, 'spe' => (int) 3, 'spa' => (int) 6, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 9, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399370' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1